Main Article Content
Abstract
This study was conducted to isolate and identify killer yeasts from soil samples that collected from different locations in Basrah and Dhi-Qar provinces. Seventy-five soil samples were collected from different areas, including sandy, arable, surface sediment and uncultivated soil, using dilution methods to cultivate a serial dilution of each soil sample. The results showed that a 112 isolates were identified biochemically using VITEK system and molecularly using internal transcribed spacer (ITS1- 5.8S-ITS2) marker. The molecular identification provided fast and precise identification results for the 112 isolates, whereas the VITEK test resulted low identification efficiency (8.2% were accurate and 91.8 % were not). The Diazonium blue B salts produced a good colour reaction in distinguishing between ascomycetes and basidiomycetes. The PCR was more accurate in identification of killer yeasts compared to the VITEK system.
Keywords
Article Details
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
References
- Alsohaili, S.A. & Bani-Hasan, B.M. (2018). Morphological and molecular identification of fungi isolated from different environmental sources in the Northern Ebvastern Desert of Jordan. Jordan J. Biol. Sci., 11(3): 329-337. http://jjbs.hu.edu.jo/vol11.htm
- Bellemain, E.; Carlsen, T.; Brochmann, C.; Coissac, E.; Taberlet, P. & Kauserud, H. (2010). ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiology, 10(1): 189. https://doi.org/10.1186/1471-2180-10-189
- Dooley, D.; Beckius, M.L. & Jeffrey, B.S. (1994). Misidentification of clinical yeast isolates by using the updated Vitek Yeast Biochemical Card. J. Clin. Microbiol., 32(12): 2889-2892. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC264196/
- Dufour, J.; Verstrepen, K.; Derdelinckx, G., Boekhout, T. & Robert, V. (2003). Yeasts in Food-Beneficial and Detrimental Aspects: Woodhead Publishing: New York: 512pp.
- Franco-Duarte, R.; ?ernáková, L.; Kadam, S.; S. Kaushik, K.; Salehi, B.; Bevilacqua, A. & Leszczewicz, M. (2019). Advances in chemical and biological methods to identify microorganisms-from past to present. Microorganisms, 7(5): 1-130. https://doi.org/10.3390/microorganisms7050130
- Freydiere, A.-M.; Guinet, R. & Boiron, P. (2001). Yeast identification in the clinical microbiology laboratory: Phenotypical methods. Sabouraudia, 39(1): 9-33. https://doi.org/10.1080/mmy.39.1.9.33
- Hagler, A.N. & Ahearn, D. (1981). Rapid diazonium blue B test to detect basidiomycetous yeasts. Int. J. Syst. Evol. Microbiol.,, 31(2): 204-208. https://doi.org/10.1099/00207713-31-2-204
- Hierro, N.; Gonzalez, A.; Mas, A. & Guillamón, J. (2004). New PCR?based methods for yeast identification. J. Appl. Microbiol., 97(4): 792-801. https://doi.org/10.1111/j.1365-2672.2004.02369.x
- Khattab, S.M.R.; Abdel-Hadi, A.M.; Abo-Dahab, N.F. & Atta, O.M. (2016). Isolation, characterization, and identification of yeasts Associated with foods from Assiut City, Egypt. British Microbiol. Res. J., 13(1): 1-10. https://doi.org/10.9734/BMRJ/2016/24170
- Kreger-van Rij, N. & Veenhuis, M. (1971). A comparative study of the cell wall structure of basidiomycetous and related yeasts. Microbiology, 68(1): 87-95. https://www.microbiologyresearch.org/content/journal/micro/10.1099/00221287-68-1-87;jsessionid=XzcjctX3N0rMq4P2m1gdKUIU.mbslive-10-240-10-108
- Latouche, G.N.; Daniel, H.; Lee, O.C.; Mitchell, T.G.; Sorrell, T.C. & Meyer, W. (1997). Comparison of use of phenotypic and genotypic characteristics for identification of species of the anamorph genus Candida and related teleomorph yeast species. J. Clin. Microbiol., 35(12): 3171-3180. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC230143/
- Magliani, W.; Conti, S.; Gerloni, M.; Bertolotti, D. & Polonelli, L. (1997). Yeast killer systems. Clin. Microbiol. Rev., 10(3): 369-400. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC172926/
- Robert, V.; Cardinali, G. & Casadevall, A. (2015). Distribution and impact of yeast thermal tolerance permissive for mammalian infection. BMC Biol., 13(1): 1-18 https://doi.org/10.1186/s12915-015-0127-3
- Rodrigues, M.G., & Fonseca, A. (2003). Molecular systematics of the dimorphic ascomycete genus Taphrina. Int. J. Syst. Evol. Microbiol., 53(2): 607-616. https://doi.org/10.1099/ijs.0.02437-0
- Rodrigues, A., Pinheiro, R., Costa, J., Santos, J., Poli, J., Rosa, C. & Nóbrega, M. (2018). Comparison between morphophysiological and molecular methods for the identification of yeasts isolated from honey. Int. Food Res. J.l, 25(1):418-422. https://docplayer.net/103197739-Comparison-between-morphophysiological-and-molecular-methods-for-the-identification-of-yeasts-isolated-from-honey.html
- Schmitt, M.J. & Breinig, F. (2002). The viral killer system in yeast: from molecular biology to application. FEMS Microbiol. Rev., 26(3): 257-276. https://doi.org/10.1111/j.1574-6976.2002.tb00614.x
- Singh, R. & Kaur, N. (2018). Biochemical and molecular characterization of a new pullulan producer Rhodosporidium paludigenum PUPY-06. J. Appl. Biol. Biotechnol.,6(1):28-37. https://doi.org/10.7324/JABB.2018.60106
- Tekpinar, A.D. & Kalmer, A. (2019). Utility of various molecular markers in fungal identification and phylogeny. Nova Hedwigia, 108(3-4): 3-4. https://doi.org/ 10.1127/nova_hedwigia/2019/0528
- Török, T. & King, A. (1991). Comparative study on the identification of food-borne yeasts. Appl. Environ. Microbiol., 57(4): 1207-1212. https://www.ncbi.nlm.nih.gov/ pmc/articles/PMC182869/
- Valenza, G.; Strasen, J.; Schäfer, F., Frosch, M., Kurzai, O., & Abele-Horn, M. (2008). Evaluation of new colourcolourimetric Vitek 2 yeast identification card by use of different source media. J. Clin. Microbiol., 46(11): 3784-3787. https://doi.org/10.1128/JCM.01318-08
- Van der Walt, J. & Hopsu-Havu, V. (1976). A colour reaction for the differentiation of ascomycetous and hemibasidiomycetous yeasts. Anton. Leeuw., 42(1-2): 157-163. https://doi.org/10.1007/BF00399460
- Westblade, L.F.; Jennemann, R.; Branda, J.A.; Bythrow, M.,;Ferraro, M.J.; Garner, O.B. & Mochon, A.B. (2013). Multicenter study evaluating the Vitek MS system for identification of medically important yeasts. J. Clin. Microbiol., 51(7): 2267-2272. https://doi.org/10.1128/JCM.00680-13
- Zhao, Y.; Tsang, C.; Xiao, M.; Chan, J.F.; Lau, S.; Kong, F. & Woo, P.C. (2017). Yeast identification by sequencing, biochemical kits, MALDI–TOF MS and rep-PCR DNA fingerprinting. Med. Mycol., 56(7): 816-827. https://doi.org/10.1093/mmy/myx118.
References
Alsohaili, S.A. & Bani-Hasan, B.M. (2018). Morphological and molecular identification of fungi isolated from different environmental sources in the Northern Ebvastern Desert of Jordan. Jordan J. Biol. Sci., 11(3): 329-337. http://jjbs.hu.edu.jo/vol11.htm
Bellemain, E.; Carlsen, T.; Brochmann, C.; Coissac, E.; Taberlet, P. & Kauserud, H. (2010). ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiology, 10(1): 189. https://doi.org/10.1186/1471-2180-10-189
Dooley, D.; Beckius, M.L. & Jeffrey, B.S. (1994). Misidentification of clinical yeast isolates by using the updated Vitek Yeast Biochemical Card. J. Clin. Microbiol., 32(12): 2889-2892. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC264196/
Dufour, J.; Verstrepen, K.; Derdelinckx, G., Boekhout, T. & Robert, V. (2003). Yeasts in Food-Beneficial and Detrimental Aspects: Woodhead Publishing: New York: 512pp.
Franco-Duarte, R.; ?ernáková, L.; Kadam, S.; S. Kaushik, K.; Salehi, B.; Bevilacqua, A. & Leszczewicz, M. (2019). Advances in chemical and biological methods to identify microorganisms-from past to present. Microorganisms, 7(5): 1-130. https://doi.org/10.3390/microorganisms7050130
Freydiere, A.-M.; Guinet, R. & Boiron, P. (2001). Yeast identification in the clinical microbiology laboratory: Phenotypical methods. Sabouraudia, 39(1): 9-33. https://doi.org/10.1080/mmy.39.1.9.33
Hagler, A.N. & Ahearn, D. (1981). Rapid diazonium blue B test to detect basidiomycetous yeasts. Int. J. Syst. Evol. Microbiol.,, 31(2): 204-208. https://doi.org/10.1099/00207713-31-2-204
Hierro, N.; Gonzalez, A.; Mas, A. & Guillamón, J. (2004). New PCR?based methods for yeast identification. J. Appl. Microbiol., 97(4): 792-801. https://doi.org/10.1111/j.1365-2672.2004.02369.x
Khattab, S.M.R.; Abdel-Hadi, A.M.; Abo-Dahab, N.F. & Atta, O.M. (2016). Isolation, characterization, and identification of yeasts Associated with foods from Assiut City, Egypt. British Microbiol. Res. J., 13(1): 1-10. https://doi.org/10.9734/BMRJ/2016/24170
Kreger-van Rij, N. & Veenhuis, M. (1971). A comparative study of the cell wall structure of basidiomycetous and related yeasts. Microbiology, 68(1): 87-95. https://www.microbiologyresearch.org/content/journal/micro/10.1099/00221287-68-1-87;jsessionid=XzcjctX3N0rMq4P2m1gdKUIU.mbslive-10-240-10-108
Latouche, G.N.; Daniel, H.; Lee, O.C.; Mitchell, T.G.; Sorrell, T.C. & Meyer, W. (1997). Comparison of use of phenotypic and genotypic characteristics for identification of species of the anamorph genus Candida and related teleomorph yeast species. J. Clin. Microbiol., 35(12): 3171-3180. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC230143/
Magliani, W.; Conti, S.; Gerloni, M.; Bertolotti, D. & Polonelli, L. (1997). Yeast killer systems. Clin. Microbiol. Rev., 10(3): 369-400. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC172926/
Robert, V.; Cardinali, G. & Casadevall, A. (2015). Distribution and impact of yeast thermal tolerance permissive for mammalian infection. BMC Biol., 13(1): 1-18 https://doi.org/10.1186/s12915-015-0127-3
Rodrigues, M.G., & Fonseca, A. (2003). Molecular systematics of the dimorphic ascomycete genus Taphrina. Int. J. Syst. Evol. Microbiol., 53(2): 607-616. https://doi.org/10.1099/ijs.0.02437-0
Rodrigues, A., Pinheiro, R., Costa, J., Santos, J., Poli, J., Rosa, C. & Nóbrega, M. (2018). Comparison between morphophysiological and molecular methods for the identification of yeasts isolated from honey. Int. Food Res. J.l, 25(1):418-422. https://docplayer.net/103197739-Comparison-between-morphophysiological-and-molecular-methods-for-the-identification-of-yeasts-isolated-from-honey.html
Schmitt, M.J. & Breinig, F. (2002). The viral killer system in yeast: from molecular biology to application. FEMS Microbiol. Rev., 26(3): 257-276. https://doi.org/10.1111/j.1574-6976.2002.tb00614.x
Singh, R. & Kaur, N. (2018). Biochemical and molecular characterization of a new pullulan producer Rhodosporidium paludigenum PUPY-06. J. Appl. Biol. Biotechnol.,6(1):28-37. https://doi.org/10.7324/JABB.2018.60106
Tekpinar, A.D. & Kalmer, A. (2019). Utility of various molecular markers in fungal identification and phylogeny. Nova Hedwigia, 108(3-4): 3-4. https://doi.org/ 10.1127/nova_hedwigia/2019/0528
Török, T. & King, A. (1991). Comparative study on the identification of food-borne yeasts. Appl. Environ. Microbiol., 57(4): 1207-1212. https://www.ncbi.nlm.nih.gov/ pmc/articles/PMC182869/
Valenza, G.; Strasen, J.; Schäfer, F., Frosch, M., Kurzai, O., & Abele-Horn, M. (2008). Evaluation of new colourcolourimetric Vitek 2 yeast identification card by use of different source media. J. Clin. Microbiol., 46(11): 3784-3787. https://doi.org/10.1128/JCM.01318-08
Van der Walt, J. & Hopsu-Havu, V. (1976). A colour reaction for the differentiation of ascomycetous and hemibasidiomycetous yeasts. Anton. Leeuw., 42(1-2): 157-163. https://doi.org/10.1007/BF00399460
Westblade, L.F.; Jennemann, R.; Branda, J.A.; Bythrow, M.,;Ferraro, M.J.; Garner, O.B. & Mochon, A.B. (2013). Multicenter study evaluating the Vitek MS system for identification of medically important yeasts. J. Clin. Microbiol., 51(7): 2267-2272. https://doi.org/10.1128/JCM.00680-13
Zhao, Y.; Tsang, C.; Xiao, M.; Chan, J.F.; Lau, S.; Kong, F. & Woo, P.C. (2017). Yeast identification by sequencing, biochemical kits, MALDI–TOF MS and rep-PCR DNA fingerprinting. Med. Mycol., 56(7): 816-827. https://doi.org/10.1093/mmy/myx118.