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Abstract

This study was conducted to isolate and identify killer yeasts from soil samples that collected from different locations in Basrah and Dhi-Qar provinces. Seventy-five soil samples were collected from different areas, including sandy, arable, surface sediment and uncultivated soil, using dilution methods to cultivate a serial dilution of each soil sample. The results showed that a 112 isolates were identified biochemically using VITEK system and molecularly using internal transcribed spacer (ITS1- 5.8S-ITS2) marker. The molecular identification provided fast and precise identification results for the 112 isolates, whereas the VITEK test resulted low identification efficiency (8.2% were accurate and 91.8 % were not). The Diazonium blue B salts produced a good colour reaction in distinguishing between ascomycetes and basidiomycetes. The PCR was more accurate in identification of killer yeasts compared to the VITEK system.

Keywords

Diazonium blue B VITEK PCR Killer yeasts Diagnosis

Article Details

How to Cite
Abu-Mejdad , N. M. ., Al-Badran, A. I. ., & Al-Saadoon, A. H. (2020). A Novel Report on Killer Yeast Strains Identification Methods. Basrah Journal of Agricultural Sciences, 33(1), 39–49. https://doi.org/10.37077/25200860.2020.32.1.04

References

  1. Alsohaili, S.A. & Bani-Hasan, B.M. (2018). Morphological and molecular identification of fungi isolated from different environmental sources in the Northern Ebvastern Desert of Jordan. Jordan J. Biol. Sci., 11(3): 329-337. http://jjbs.hu.edu.jo/vol11.htm
  2. Bellemain, E.; Carlsen, T.; Brochmann, C.; Coissac, E.; Taberlet, P. & Kauserud, H. (2010). ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiology, 10(1): 189. https://doi.org/10.1186/1471-2180-10-189
  3. Dooley, D.; Beckius, M.L. & Jeffrey, B.S. (1994). Misidentification of clinical yeast isolates by using the updated Vitek Yeast Biochemical Card. J. Clin. Microbiol., 32(12): 2889-2892. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC264196/
  4. Dufour, J.; Verstrepen, K.; Derdelinckx, G., Boekhout, T. & Robert, V. (2003). Yeasts in Food-Beneficial and Detrimental Aspects: Woodhead Publishing: New York: 512pp.
  5. Franco-Duarte, R.; ?ernáková, L.; Kadam, S.; S. Kaushik, K.; Salehi, B.; Bevilacqua, A. & Leszczewicz, M. (2019). Advances in chemical and biological methods to identify microorganisms-from past to present. Microorganisms, 7(5): 1-130. https://doi.org/10.3390/microorganisms7050130
  6. Freydiere, A.-M.; Guinet, R. & Boiron, P. (2001). Yeast identification in the clinical microbiology laboratory: Phenotypical methods. Sabouraudia, 39(1): 9-33. https://doi.org/10.1080/mmy.39.1.9.33
  7. Hagler, A.N. & Ahearn, D. (1981). Rapid diazonium blue B test to detect basidiomycetous yeasts. Int. J. Syst. Evol. Microbiol.,, 31(2): 204-208. https://doi.org/10.1099/00207713-31-2-204
  8. Hierro, N.; Gonzalez, A.; Mas, A. & Guillamón, J. (2004). New PCR?based methods for yeast identification. J. Appl. Microbiol., 97(4): 792-801. https://doi.org/10.1111/j.1365-2672.2004.02369.x
  9. Khattab, S.M.R.; Abdel-Hadi, A.M.; Abo-Dahab, N.F. & Atta, O.M. (2016). Isolation, characterization, and identification of yeasts Associated with foods from Assiut City, Egypt. British Microbiol. Res. J., 13(1): 1-10. https://doi.org/10.9734/BMRJ/2016/24170
  10. Kreger-van Rij, N. & Veenhuis, M. (1971). A comparative study of the cell wall structure of basidiomycetous and related yeasts. Microbiology, 68(1): 87-95. https://www.microbiologyresearch.org/content/journal/micro/10.1099/00221287-68-1-87;jsessionid=XzcjctX3N0rMq4P2m1gdKUIU.mbslive-10-240-10-108
  11. Latouche, G.N.; Daniel, H.; Lee, O.C.; Mitchell, T.G.; Sorrell, T.C. & Meyer, W. (1997). Comparison of use of phenotypic and genotypic characteristics for identification of species of the anamorph genus Candida and related teleomorph yeast species. J. Clin. Microbiol., 35(12): 3171-3180. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC230143/
  12. Magliani, W.; Conti, S.; Gerloni, M.; Bertolotti, D. & Polonelli, L. (1997). Yeast killer systems. Clin. Microbiol. Rev., 10(3): 369-400. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC172926/
  13. Robert, V.; Cardinali, G. & Casadevall, A. (2015). Distribution and impact of yeast thermal tolerance permissive for mammalian infection. BMC Biol., 13(1): 1-18 https://doi.org/10.1186/s12915-015-0127-3
  14. Rodrigues, M.G., & Fonseca, A. (2003). Molecular systematics of the dimorphic ascomycete genus Taphrina. Int. J. Syst. Evol. Microbiol., 53(2): 607-616. https://doi.org/10.1099/ijs.0.02437-0
  15. Rodrigues, A., Pinheiro, R., Costa, J., Santos, J., Poli, J., Rosa, C. & Nóbrega, M. (2018). Comparison between morphophysiological and molecular methods for the identification of yeasts isolated from honey. Int. Food Res. J.l, 25(1):418-422. https://docplayer.net/103197739-Comparison-between-morphophysiological-and-molecular-methods-for-the-identification-of-yeasts-isolated-from-honey.html
  16. Schmitt, M.J. & Breinig, F. (2002). The viral killer system in yeast: from molecular biology to application. FEMS Microbiol. Rev., 26(3): 257-276. https://doi.org/10.1111/j.1574-6976.2002.tb00614.x
  17. Singh, R. & Kaur, N. (2018). Biochemical and molecular characterization of a new pullulan producer Rhodosporidium paludigenum PUPY-06. J. Appl. Biol. Biotechnol.,6(1):28-37. https://doi.org/10.7324/JABB.2018.60106
  18. Tekpinar, A.D. & Kalmer, A. (2019). Utility of various molecular markers in fungal identification and phylogeny. Nova Hedwigia, 108(3-4): 3-4. https://doi.org/ 10.1127/nova_hedwigia/2019/0528
  19. Török, T. & King, A. (1991). Comparative study on the identification of food-borne yeasts. Appl. Environ. Microbiol., 57(4): 1207-1212. https://www.ncbi.nlm.nih.gov/ pmc/articles/PMC182869/
  20. Valenza, G.; Strasen, J.; Schäfer, F., Frosch, M., Kurzai, O., & Abele-Horn, M. (2008). Evaluation of new colourcolourimetric Vitek 2 yeast identification card by use of different source media. J. Clin. Microbiol., 46(11): 3784-3787. https://doi.org/10.1128/JCM.01318-08
  21. Van der Walt, J. & Hopsu-Havu, V. (1976). A colour reaction for the differentiation of ascomycetous and hemibasidiomycetous yeasts. Anton. Leeuw., 42(1-2): 157-163. https://doi.org/10.1007/BF00399460
  22. Westblade, L.F.; Jennemann, R.; Branda, J.A.; Bythrow, M.,;Ferraro, M.J.; Garner, O.B. & Mochon, A.B. (2013). Multicenter study evaluating the Vitek MS system for identification of medically important yeasts. J. Clin. Microbiol., 51(7): 2267-2272. https://doi.org/10.1128/JCM.00680-13
  23. Zhao, Y.; Tsang, C.; Xiao, M.; Chan, J.F.; Lau, S.; Kong, F. & Woo, P.C. (2017). Yeast identification by sequencing, biochemical kits, MALDI–TOF MS and rep-PCR DNA fingerprinting. Med. Mycol., 56(7): 816-827. https://doi.org/10.1093/mmy/myx118.